Medvedovic, Mario: search on Z-Library

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1

Balancing yield, purity and practicality: a modified differential ultracentrifugation protocol for efficient isolation of small extracellular vesicles from human serum

Langevin, Scott M., Kuhnell, Damaris, Orr-Asman, Melissa A., Biesiada, Jacek, Zhang, Xiang, Medvedovic, Mario, Thomas, Hala Elnakat

Journal:

Year:

2019

Language:

english

File:

PDF, 2.51 MB

english, 2019

2

The transcriptional signature of dioxin in human hepatoma HepG2 cells

Alvaro Puga, Andrew Maier, Mario Medvedovic

Journal:

Biochemical Pharmacology

Year:

2000

Language:

english

File:

PDF, 270 KB

english, 2000

3

Control of Nutrient Stress-Induced Metabolic Reprogramming by PKCζ in Tumorigenesis

Ma, Li, Tao, Yongzhen, Duran, Angeles, Llado, Victoria, Galvez, Anita, Barger, Jennifer F., Castilla, Elias A., Chen, Jing, Yajima, Tomoko, Porollo, Aleksey, Medvedovic, Mario, Brill, Laurence M., Pla

Journal:

Year:

2013

Language:

english

File:

PDF, 2.52 MB

english, 2013

4

MicroRNA networks associated with active systemic juvenile idiopathic arthritis regulate CD163 expression and anti-inflammatory functions in macrophages through two distinct mechanisms

Do, Thuy, Tan, Rachel, Bennett, Mark, Medvedovic, Mario, Grom, Alexei A., Shen, Nan, Thornton, Sherry, Schulert, Grant S.

Journal:

Journal of Leukocyte Biology

Year:

2018

Language:

english

File:

PDF, 1.49 MB

english, 2018

5

Mutational specificity in a shuttle vector replicating in chromium(VI)-treated mammalian cells

Shaojun Liu, Mario Medvedovic, Kathleen Dixon

Journal:

Environmental and Molecular Mutagenesis

Year:

1999

Language:

english

File:

PDF, 150 KB

english, 1999

6

Expression of ATM in ataxia telangiectasia fibroblasts rescues defects in DNA double-strand break repair in nuclear extracts

Yuling Li, Michael P. Carty, Gregory G. Oakley, Michael M. Seidman, Mario Medvedovic, Kathleen Dixon

Journal:

Environmental and Molecular Mutagenesis

Year:

2001

Language:

english

File:

PDF, 172 KB

english, 2001

7

XPA protein alters the specificity of ultraviolet light–induced mutagenesis in vitro

Nicole M. King, Gregory G. Oakley, Mario Medvedovic, Kathleen Dixon

Journal:

Environmental and Molecular Mutagenesis

Year:

2001

Language:

english

File:

PDF, 168 KB

english, 2001

8

Gene position within chromosome territories correlates with their involvement in distinct rearrangement types in thyroid cancer cells

Manoj S. Gandhi, James R. Stringer, Marina N. Nikiforova, Mario Medvedovic, Yuri E. Nikiforov

Journal:

Genes, Chromosomes and Cancer

Year:

2009

Language:

english

File:

PDF, 232 KB

english, 2009

9

Integrative metabolome and transcriptome profiling reveals discordant energetic stress between mouse strains with differential sensitivity to acrolein-induced acute lung injury

James P. Fabisiak, Mario Medvedovic, Danny C. Alexander, Jonathan E. McDunn, Vincent J. Concel, Kiflai Bein, An Soo Jang, Annerose Berndt, Louis J. Vuga, Kelly A. Brant, Hannah Pope-Varsalona, Richard

Journal:

Molecular Nutrition & Food Research

Year:

2011

Language:

english

File:

PDF, 410 KB

english, 2011

10

Competitive coexistence of two Pneumocystis species

Crystal R. Icenhour, Jonathan Arnold, Mario Medvedovic, Melanie T. Cushion

Journal:

Infection, Genetics and Evolution

Year:

2006

Language:

english

File:

PDF, 431 KB

english, 2006

11

WebGimm: An integrated web-based platform for cluster analysis, functional analysis, and interactive visualization of results

Vineet K Joshi, Johannes M Freudenberg, Zhen Hu, Mario Medvedovic

Journal:

Source Code for Biology and Medicine

Year:

2011

Language:

english

File:

PDF, 630 KB

english, 2011

12

Different global gene expression profiles in benzo[a]pyrene-and dioxin-treated vascular smooth muscle cells of AHR-knockout and wild-type mice

Saikumar Karyala, Junhai Guo, Maureen Sartor, Mario Medvedovic, Alvaro Puga, Patrick Ryan, Craig R. Tomlinson

Journal:

Cardiovascular Toxicology

Year:

2004

Language:

english

File:

PDF, 308 KB

english, 2004

13

Gene expression profiles of mouse aorta and cultured vascular smooth muscle cells differ widely, yet show common responses to dioxin exposure

Alvaro Puga, Maureen A. Sartor, Ming-ya Huang, J. Kevin Kerzee, Yu-Dan Wei, Craig R. Tomlinson, C. Stuart Baxter, Mario Medvedovic

Journal:

Cardiovascular Toxicology

Year:

2004

Language:

english

File:

PDF, 310 KB

english, 2004

14

Clustering mutational spectra via classification likelihood and markov chain monte carlo algorithms

Mario Medvedovic, Paul Succop, Rakesh Shukla, Kathleen Dixon

Journal:

Journal of Agricultural, Biological, and Environmental Statistics

Year:

2001

Language:

english

File:

PDF, 210 KB

english, 2001

15

Genome-wide analyses show that nuclear and cytoplasmic RNA levels are differentially affected by dioxin

Jennifer A. Schwanekamp, Maureen A. Sartor, Saikumar Karyala, Danielle Halbleib, Mario Medvedovic, Craig R. Tomlinson

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression

Year:

2006

Language:

english

File:

PDF, 489 KB

english, 2006

16

Mutational biases associated with potential iron-binding DNA motifs in rodent lacI and human p53 mutational databases

David M. Sonntag, Johan de Boer, Mario Medvedovic, C.Stuart Baxter, Grace LeMasters, Glenn Talaska

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2004

Language:

english

File:

PDF, 466 KB

english, 2004

17

Characterization of novel non-clonal intrachromosomal rearrangements between the H4 and PTEN genes (H4/PTEN) in human thyroid cell lines and papillary thyroid cancer specimens

Efisio Puxeddu, Guisheng Zhao, James R. Stringer, Mario Medvedovic, Sonia Moretti, James A. Fagin

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2005

Language:

english

File:

PDF, 524 KB

english, 2005

18

Expression of genes in the TGF-β signaling pathway is significantly deregulated in smooth muscle cells from aorta of aryl hydrocarbon receptor knockout mice

Junhai Guo, Maureen Sartor, Saikumar Karyala, Mario Medvedovic, Simone Kann, Alvaro Puga, Patrick Ryan, Craig R Tomlinson

Journal:

Toxicology and Applied Pharmacology

Year:

2004

Language:

english

File:

PDF, 251 KB

english, 2004

19

CLEAN: CLustering Enrichment ANalysis

Johannes M Freudenberg, Vineet K Joshi, Zhen Hu, Mario Medvedovic

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 2.21 MB

english, 2009

20

A semi-parametric Bayesian model for unsupervised differential co-expression analysis

Johannes M Freudenberg, Siva Sivaganesan, Michael Wagner, Mario Medvedovic

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 7.49 MB

english, 2010

21

Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments

Maureen A Sartor, Craig R Tomlinson, Scott C Wesselkamper, Siva Sivaganesan, George D Leikauf, Mario Medvedovic

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.12 MB

english, 2006

22

Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data

Xiangdong Liu, Walter J Jessen, Siva Sivaganesan, Bruce J Aronow, Mario Medvedovic

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.44 MB

english, 2007

23

Genomics Portals: integrative web-platform for mining genomics data

Kaustubh Shinde, Mukta Phatak, Freudenberg M Johannes, Jing Chen, Qian Li, Joshi K Vineet, Zhen Hu, Krishnendu Ghosh, Jaroslaw Meller, Mario Medvedovic

Journal:

Year:

2010

Language:

english

File:

PDF, 2.37 MB

english, 2010

24

Gene expression profiling of blood to predict the onset of leukemia

Mario Medvedovic, Danielle Halbleib, Marian L. Miller, Kathy LaDow, Maureen A. Sartor, Craig R. Tomlinson

Journal:

Blood Cells, Molecules, and Diseases

Year:

2009

Language:

english

File:

PDF, 1.76 MB

english, 2009

25

NF-κB driven cardioprotective gene programs; Hsp70.3 and cardioprotection after late ischemic preconditioning

Michael Tranter, Xiaoping Ren, Tiffany Forde, Michael E. Wilhide, Jing Chen, Maureen A. Sartor, Mario Medvedovic, W. Keith Jones

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2010

Language:

english

File:

PDF, 1.33 MB

english, 2010

26

Identification of a NF-κB cardioprotective gene program: NF-κB regulation of Hsp70.1 contributes to cardioprotection after permanent coronary occlusion

Michael E. Wilhide, Michael Tranter, Xiaoping Ren, Jing Chen, Maureen A. Sartor, Mario Medvedovic, W. Keith Jones

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2011

Language:

english

File:

PDF, 575 KB

english, 2011

27

Deciphering gene expression program of MAP3K1 in mouse eyelid morphogenesis

Jin, Chang, Chen, Jing, Meng, Qinghang, Carreira, Vinicius, Tam, Neville N.C., Geh, Esmond, Karyala, Saikumar, Ho, Shuk-Mei, Zhou, Xiangtian, Medvedovic, Mario, Xia, Ying

Journal:

Developmental Biology

Year:

2013

Language:

english

File:

PDF, 1.08 MB

english, 2013

28

Developmental Characteristics of Adapting Mouse Small Intestine Crypt Cells

Christopher R. Erwin, Marcus D. Jarboe, Maureen A. Sartor, Mario Medvedovic, Keith F. Stringer, Brad W. Warner, Michael D. Bates

Journal:

Gastroenterology

Year:

2006

Language:

english

File:

PDF, 5.24 MB

english, 2006

29

Genomewide Analysis of Aryl Hydrocarbon Receptor Binding Targets Reveals an Extensive Array of Gene Clusters that Control Morphogenetic and Developmental Programs

Sartor, Maureen A., Schnekenburger, Michael, Marlowe, Jennifer L., Reichard, John F., Wang, Ying, Fan, Yunxia, Ma, Ci, Karyala, Saikumar, Halbleib, Danielle, Liu, Xiangdong, Medvedovic, Mario, Puga, A

Journal:

Environmental Health Perspectives

Year:

2009

Language:

english

File:

PDF, 1.44 MB

english, 2009

30

From co-expression to co-regulation: how many microarray experiments do we need?

Ka Yee Yeung, Mario Medvedovic, Roger E Bumgarner

Journal:

Year:

2004

Language:

english

File:

PDF, 286 KB

english, 2004

31

Clustering gene-expression data with repeated measurements

Ka Yee Yeung, Mario Medvedovic, Roger E Bumgarner

Journal:

Year:

2003

Language:

english

File:

PDF, 340 KB

english, 2003

32

Long-term exposure to low-concentrations of Cr(VI) induce DNA damage and disrupt the transcriptional response to benzo[a]pyrene

Ovesen, Jerald L., Fan, Yunxia, Chen, Jing, Medvedovic, Mario, Xia, Ying, Puga, Alvaro

Journal:

Year:

2014

Language:

english

File:

PDF, 2.89 MB

english, 2014

33

Gene Expression Profiling Identifies Lobe-Specific and Common Disruptions of Multiple Gene Networks in Testosterone-Supported, 17β-Estradiol- or Diethylstilbestrol-Induced Prostate Dysplasia in Noble Rats

Tam, Neville N.C., Szeto, Carol Ying-Ying, Sartor, Maureen A., Medvedovic, Mario, Ho, Shuk-Mei

Journal:

Year:

2008

Language:

english

File:

PDF, 3.00 MB

english, 2008

34

Transcriptome Analyses in Normal Prostate Epithelial Cells Exposed to Low-Dose Cadmium: Oncogenic and Immunomodulations Involving the Action of Tumor Necrosis Factor

Shlomo Bakshi, Xiang Zhang, Sonia Godoy-Tundidor, Robert Yuk Sing Cheng, Maureen A. Sartor, Mario Medvedovic and Shuk-Mei Ho

Journal:

Environmental Health Perspectives

Year:

2008

Language:

english

File:

PDF, 2.19 MB

english, 2008

35

Genomewide Analysis of Aryl Hydrocarbon Receptor Binding Targets Reveals an Extensive Array of Gene Clusters That Control Morphogenetic and Developmental Programs

Maureen A. Sartor, Michael Schnekenburger, Jennifer L. Marlowe, John F. Reichard, Ying Wang, Yunxia Fan, Ci Ma, Saikumar Karyala, Danielle Halbleib, Xiangdong Liu, Mario Medvedovic and Alvaro Puga

Journal:

Environmental Health Perspectives

Year:

2009

Language:

english

File:

PDF, 2.74 MB

english, 2009

36

What Is the Potential Measurement Error in Occupational Exposure Studies?

Levin, Linda S., Rice, Carol H., Lemasters, Grace K., Lockey, James E., Medvedovic, Mario

Journal:

Journal of the Air & Waste Management Association (1995-)

Year:

2000

Language:

english

File:

PDF, 287 KB

english, 2000

37

SERPINB3/B4 Contributes to Early Inflammation and Barrier Dysfunction in an Experimental Murine Model of Atopic Dermatitis

Sivaprasad, Umasundari, Kinker, Kayla G, Ericksen, Mark B, Lindsey, Mark, Gibson, Aaron M, Bass, Stacey A, Hershey, Nicolas S, Deng, Jingyuan, Medvedovic, Mario, Khurana Hershey, Gurjit K

Journal:

The Journal of Investigative Dermatology

Year:

2015

Language:

english

File:

PDF, 1.80 MB

english, 2015

38

Sex- and tissue-specific methylome changes in brains of mice perinatally exposed to lead

Sánchez-Martín, Francisco Javier, Lindquist, Diana M., Landero-Figueroa, Julio, Zhang, Xiang, Chen, Jing, Cecil, Kim M., Medvedovic, Mario, Puga, Alvaro

Journal:

NeuroToxicology

Year:

2015

Language:

english

File:

PDF, 2.56 MB

english, 2015

39

Identification of Secretaglobin Scgb2a1 as a target for developmental reprogramming by BPA in the rat prostate

Yean Wong, Rebecca Lee, Wang, Quan, Treviño, Lindsey S., Bosland, Maarten C., Chen, Jing, Medvedovic, Mario, Prins, Gail S., Kannan, Kurunthachalam, Ho, Shuk-Mei, Walker, Cheryl Lyn

Journal:

Year:

2015

Language:

english

File:

PDF, 1.59 MB

english, 2015

40

Isozyme-Specific Abnormalities of PKC in Thyroid Cancer: Evidence for Post-Transcriptional Changes in PKC Epsilon

Knauf, Jeffrey A., Ward, Laura S., Nikiforov, Yuri E., Nikiforova, Marina, Puxeddu, Efisio, Medvedovic, Mario, Liron, Tamar, Mochly-Rosen, Daria, Fagin, James A.

Journal:

Journal of Clinical Endocrinology & Metabolism

Year:

2002

Language:

english

File:

PDF, 356 KB

english, 2002

41

Deletion Hotspots in AMACR Promoter CpG Island Are cis-Regulatory Elements Controlling the Gene Expression in the Colon

Zhang, Xiang, Leav, Irwin, Revelo, Monica P., Deka, Ranjan, Medvedovic, Mario, Jiang, Zhong, Ho, Shuk-Mei, Stubbs, Lisa

Journal:

Year:

2009

Language:

english

File:

PDF, 702 KB

english, 2009

42

Stratified randomization controls better for batch effects in 450K methylation analysis: a cautionary tale

Buhule, Olive D., Minster, Ryan L., Hawley, Nicola L., Medvedovic, Mario, Sun, Guangyun, Viali, Satupaitea, Deka, Ranjan, McGarvey, Stephen T., Weeks, Daniel E.

Journal:

Frontiers in Genetics

Year:

2014

Language:

english

File:

PDF, 2.03 MB

english, 2014

43

SPDEF Inhibits Prostate Carcinogenesis by Disrupting a Positive Feedback Loop in Regulation of the Foxm1 Oncogene

Cheng, Xin-Hua, Black, Markaisa, Ustiyan, Vladimir, Le, Tien, Fulford, Logan, Sridharan, Anusha, Medvedovic, Mario, Kalinichenko, Vladimir V., Whitsett, Jeffrey A., Kalin, Tanya V., Horwitz, Marshall

Journal:

Year:

2014

Language:

english

File:

PDF, 6.14 MB

english, 2014

44

Genome-Wide Signatures of Transcription Factor Activity: Connecting Transcription Factors, Disease, and Small Molecules

Chen, Jing, Hu, Zhen, Phatak, Mukta, Reichard, John, Freudenberg, Johannes M., Sivaganesan, Siva, Medvedovic, Mario, Morris, Quaid

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 2.00 MB

english, 2013

45

Disruption of Aryl Hydrocarbon Receptor Homeostatic Levels during Embryonic Stem Cell Differentiation Alters Expression of Homeobox Transcription Factors that Control Cardiomyogenesis

Wang, Qin, Chen, Jing, Ko, Chia-I, Fan, Yunxia, Carreira, Vinicius, Chen, Yinglei, Xia, Ying, Medvedovic, Mario, Puga, Alvaro

Journal:

Environmental Health Perspectives

Year:

2013

Language:

english

File:

PDF, 2.10 MB

english, 2013

46

Research Resource: Estrogen-Driven Prolactin-Mediated Gene-Expression Networks in Hormone-Induced Prostatic Intraepithelial Neoplasia

Tam, Neville N.C., Szeto, Carol Y.Y., Freudenberg, Johannes M., Fullenkamp, Amy N., Medvedovic, Mario, Ho, Shuk-Mei

Journal:

Molecular Endocrinology

Year:

2010

Language:

english

File:

PDF, 637 KB

english, 2010

47

Exposure of human prostaspheres to Bisphenol A epigenetically regulates SNORD family non-coding RNAs via histone modification

Ho, Shuk-Mei, Cheong, Ana, Lam, Hung-Ming, Hu, Wen-Yang, Shi, Guang-Bin, Zhu, Xuegong, Chen, Jing, Zhang, Xiang, Medvedovic, Mario, Leung, Yuet-Kin, Prins, Gail S.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.89 MB

english, 2015

48

Genomic Profile of Matrix and Vasculature Remodeling in TGF-α–Induced Pulmonary Fibrosis

Hardie, William D., Korfhagen, Thomas R., Sartor, Maureen A., Prestridge, Adrienne, Medvedovic, Mario, Le Cras, Timothy D., Ikegami, Machiko, Wesselkamper, Scott C., Davidson, Cynthia, Dietsch, Maggie

Journal:

American Journal of Respiratory Cell and Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.32 MB

english, 2007

49

The Role of Metallothionein in the Pathogenesis of Acute Lung Injury

Wesselkamper, Scott C., McDowell, Susan A., Medvedovic, Mario, Dalton, Timothy P., Deshmukh, Hitesh S., Sartor, Maureen A., Case, Lisa M., Henning, Lisa N., Borchers, Michael T., Tomlinson, Craig R.,

Journal:

American Journal of Respiratory Cell and Molecular Biology

Year:

2006

Language:

english

File:

PDF, 171 KB

english, 2006

50

Gene Expression Changes during the Development of Acute Lung Injury Role of Transforming Growth Factor β

Wesselkamper, Scott C., Case, Lisa M., Henning, Lisa N., Borchers, Michael T., Tichelaar, Jay W., Mason, John M., Dragin, Nadine, Medvedovic, Mario, Sartor, Maureen A., Tomlinson, Craig R., Leikauf, G

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

2005

Language:

english

File:

PDF, 432 KB

english, 2005